Publications
Boxberger, A., Chen, B., Olson, L., Cordova, M., Mahmalji J., Rios, A., Linke, A.-C., & Fishman, I. (2025). Functional connectivity patterns differ as a function of co-occurring attentional problems in preschoolers with autism. Journal of Neurodevelopmental Disorders, https://doi.org/10.1186/s11689-025-09650-4
Sridhar, A., Keehn, R.J., Wilkinson, M., Gao, Y., Olson, M., Mash, L., Alemu, K., Manley, A, Marinkovic, K., Müller, R.-A., & Linke, A.C. (2025). Increased heterogeneity and task-related reconfiguration of functional connectivity within a lexicosemantic network in autism. Neuroimage: Clinical, 44, https://doi.org/10.1016/j.nicl.2024.103694
Montaña-Valverde, G., Linke, A., Slušna, D., Muchart-López, J., Rodríquez-Fornells, A., Deco, G., & Hinzen, W. (2024). Brain function in language and associated networks in non- or minimally verbal children. bioRxiv. Under Review at Brain Communications.
Pedrahita, S., Linke, A.C., Cordova, M., Wilkinson, M., Hau, J., Toro, G., Alemu, K. Kolli, J., Müller, R.-A., & Carper, A. (2024). Decreased BOLD signal variability in middle-aged and older adults on the Autism Spectrum. bioRxiv. Under Review at Autism Research.
Linke, A.C., Chen, B., Olson, L., Cordova, M., Wilkinson, M., Wang, T., Herrera, M., Salmina, M., Rios, A., Mahmalji, J., Do, T., Vu, J., Budman, M., Walker, A., & Fishman, I. (2024). Altered development of the Hurst Exponent in medial prefrontal cortex in preschoolers with autism. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, https://doi.org/10.1016/j.bpsc.2024.09.003
Kohli, J.S., Linke, A.C., Martindale, I.A., Wilkinson, M., Kinnear, M.K., Lincoln, A.J., Hau, J., Shryock, I., Omaleki, V., Alemu, K., Pedrahita, S., Fishman, I., Müller, R.-A., & Carper, R., (2024). Associations between atypical intracortical myelin content and neuropsychological functions in middle to older aged adults with ASD. Brain and Behavior, 14 (6), e3594.
Chen, B., Olson, L., Rios, A., Salmina, M., Linke A. & Fishman, I. (2024). Reduced covariation between brain morphometry and local spontaneous activity in young children with ASD. Cerebral Cortex, 34 (13), 112-120.
Slušná, D., Kohli, J.S., Hau, J., Prado, J.A.L., Linke, A.C., & Hinzen, W. (2024). Functional dysregulation of the auditory cortex in bilateral perisylvian polymicrogyria: Multiparametric case analysis of the absent speech phenotype. Cortex, 171, 423-434.
Lui, C., Fan, J., Bailey, B., Müller, R.-A., & Linke, A.C. (2023). Assessing predictive ability of dynamic time warping functional connectivity for ASD classification. Int. Journal of Biomedical Imaging, 2, 1-13.
Cabral, L., Zubiaurre-Elorza, L., Wild, C.J, Linke, A.C., & Cusack, R. (2022). Anatomical correlates of category-selective visual regions have distinctive signatures of connectivity in neonates. Developmental Cognitive Neuroscience, 58, 101179.
Wilkinson, M., Jao Keehn, R.J., Linke, A.C., You, Y., Gao, Y. Alemu, K., Correas, A., Rosen, B.Q., Kohli, J.S., Wagner, L., Sridhar, A., Marinkovic, K., & Müller, R.-A. (2022). FMRI BOLD and MEG theta power reflect complementary aspects of activity during lexicosemantic decision in adolescents with ASD. Neuroimage: Reports, 2 (4), 100134.
Chen, B., Linke, A., Olson, L., Kohli, J., Kinnear, M., Sereno, M., Müller, R.-A., Carper, R., & Fishman, I. (2022). Cortical myelination in toddlers and preschoolers with autism spectrum disorder. Developmental Neurobiology, 82 (3), 261-274.
Hau, J., Baker, A., Chaaban, C., Kohli, J.S., Jao Keehn, R.J., Linke, A.C., Mash, L.E., Wilkinson, M., Kinnear, M.K., Müller, R.-A., & Carper, R. (2022). Reduced asymmetry of the hand knob area and decreased sensorimotor u-fiber connectivity in middle-aged adults with autism. Cortex, 153, 110-125.
Linke, A.C., Slušná, D., Kohli, J.S., Álvarez-Linera, P., Müller, R.-A., & Hinzen, W. (2021). Morphometry and functional connectivity of auditory cortex in school-age children with profound language disabilities: Five comparative case studies. Brain and Cognition, https://doi.org/10.1016/j.bandc.2021.105822
Linke, A.C., Chen, B., Olson, L., Ibarra, C.,Fong, C., Reynolds, S., Apostol, M., Kinnear, M.K., Müller, R.-A. & Fishman, I. (2021). Sleep problems in preschoolers with autism spectrum disorders are associated with sensory sensitivities and thalamocortical overconnectivity. Biological Psychiatry: CNNI, doi: 10.1016/j.bpsc.2021.07.008.
Mash, L.E., Linke, A.C., Gao, Y., Wilkinson, M., Olson, M., Jao Keehn, J., & Müller, R.-A. (2021). BOLD lag patterns differ between rest and task conditions, but are largely typical in autism. Brain Connectivity. pdf
Chen, B., Linke, A., Olson, L., Ibarra, C., Kinnear, M., & Fishman, I. (2021). Resting state functional networks in 1-to-3-year-old typically developing children. Developmental Cognitive Neuroscience, https://doi.org/10.1016/j.dcn.2021.100991.
Tung, R., Reiter, M.A., Linke, A.C., Kohli, J.S., Kinnear, M.K, Müller, R.-A., & Carper, A. (2021). Functional connectivity within an anxiety network and associations with anxiety symptom severity in middle-aged adults with and without autism. Autism Research, https://doi.org/10.1002/aur.2579.
Chen, B., Linke, A.C., Olson, L., Ibarra, C., Reynolds, S., Müller, R.-A., Kinnear, M., & Fishman, I. (2021). Greater functional connectivity between sensory networks is related to symptom severity in toddlers with autism spectrum disorders. Journal of Child Psychology and Psychiatry, 62 (2), 160-170.
Olson, L., Chen, B., Ibarra, C., Wang, T., Mash, L., Linke, A., Kinnear, M., & Fishman, I. (2021). Externalizing behaviors are associated with increased parenting stress in caregivers of young children with autism. Journal of Autism and Developmental Disorders, https://doi.org/10.1007/s10803-021-04995-w
Müller, R.-A., & Linke, A. (2021). Functional Connectivity in Autism Spectrum Disorders: Challenges and Perspectives. Brain Network Dysfunction in Neuropsychiatric Illness. Eds. Vaibhav A. Diwadkar & Simon Eickhoff, Springer, Chapter, 239-272.
Olson, L., Kinnear, M., Chen, B., Reynolds, S., Ibarra, C., Wang, T., Linke, A. & Fishman, I. (2021). Socioeconomic factors account for variability in language skills in preschoolers with autism spectrum disorders. Journal of Developmental and Behavioral Pediatrics, 42 (2), 101-108.
Linke, A.C., Mash, L.E., Fong, C.H., Kinnear, M.K., Kohli, J.S., Wilkinson, M., Tung, R., Jao Keehn, R.J., Carper, R., Fishman, I. & Müller, R.-A. (2020). Dynamic time warping outperforms Pearson correlation in detecting atypical functional connectivity in autism spectrum disorders. Neuroimage, 223, 117383.
Olson, L.A., Mash, L.E., Linke, A., Fong, C.H., Müller, R.-A., & Fishman, I. (2020). Sex-related patterns of intrinsic functional connectivity in children and adolescents with autism spectrum disorders. Autism, 24 (8), 2190-2201.
Mash, L.E., Keehn, B., Linke, A.C., Liu, T.T., Helm, J.L., Haist, F., Townsend, J., & Müller, R.-A. (2020). Atypical relationships between spontaneous EEG and fMRI activity in autism. Brain Connectivity, 10 (1), 18-28.
Linke, A.C., Kinnear, M., Kohli, J.S., Fong, C.H., Lincoln, A.J., Carper, R.A., & Müller, R.-A. (2020). Impaired motor skills and atypical functional connectivity of the sensorimotor system in 40-65 year old adults with autism spectrum disorders. Neurobiologicy of Aging, 85, 104-112. pdf
Cabral, L., Zubiaurre, L., Wild, C., Linke, A., & Cusack, R. (2019). Category-selective visual regions have distinct signatures of connectivity in early infancy. bioRxiv, doi: https://doi.org/10.1101/675421
Gao, Y., Linke, A., Jao Keehn, R. J., Punyamurthula, S., Jahedi, A., Gates, K., Fishman, I., Müller, R.-A. (2019). The language network in autism: Atypical functional connectivity with default mode and visual regions. Autism Research, 12, 1344-1355. pdf
Jao Keehn, R.J., Nair, S., Pueschel, E.B., Linke, A.C., Fishman, I. & Müller, R.-A. (2019). Atypical local and distal patterns of occipito-frontal functional connectivity are related to symptom severity in autism. Cerebral Cortex, 29, 3319-3330. pdf
Mash, L.E., Linke, A.C., Olson, L.A., Fishman, I., Liu, T. & Müller, R.-A. (2019) Transient states of network connectivity are atypical in autism: A dynamic functional connectivity study. Human Brain Mapping, 40 (8), 2377-2389. pdf
Reiter, M.A., Mash, L.E., Linke, A.C., Fong, C.H., Fishman, I. & Müller, R.-A. (2019) Distinct patterns of atypical functional connectivity in lower-functioning autism. Biological Psychiatry Cognitive Neuroscience and Neuroimaging, 4 (3), 215-259. pdf
Fishman, I., Linke, A., Hau, J., Carper, R., & Müller, R.-A. (2018). Atypical functional connectivity of amygdala related to reduced symptoms severity in children with autism. Journal of the American Academy of Child & Adolescent Psychiatry, 57 (10), 764-774. pdf
Linke, A.C., Roach-Fox, E., Vriezen, E., Prasad, A.N., & Cusack, R. (2018). Altered activation and functional asymmetries of Exner's Area but not the Visual Word Form Area in a child with sudden-onset of persistent mirror writing. Neuropsychologia, 117, 322-331. pdf
Cusack, R., Wild, C., Zubiaurre-Elorza, L., & Linke, A.C. (2018). Why does language not emerge until the second year? Hearing Research. pdf
Linke, A.C., Wild, C., Zubiaurre-Elorza, L, Duffy, H., Herzmann, C., Han, V., Lee, D.S.C., & Cusack, R. (2018). Disruption to functional networks in neonates with perinatal brain injury predicts motor skills at 8 months. Neuroimage Clinical. pdf
Abbott, A.E., Linke, A.C., Nair, A., Jahedi, A., Alba, L.A., Keown, C.L., Fishman, I. & Müller, R.A. (2018). Repetitive behaviors in autism are linked to imbalance of corticostriatal connectivity: A functional connectivity MRI study. Social Cognitive Affective Neuroscience. pdf
Zubiaurre-Elorza, L., Linke, A.C., Herzmann, C., Wild, C.J., Duffy, H., Lee, D.S.C., Han, V.K., & Cusack R. (2018). Auditory structural connectivity in preterm and healthy term infants during the first postnatal year. Developmental Psychobiology. pdf
Mash, L.E., Reiter, M.A., Linke, A.C., Townsend, J. & Müller, R.-A. (2017) Multimodal Approaches to Functional Connectivity in Autism Spectrum Disorders: An Integrative Perspective. Developmental Neurobiology. pdf
Cusack, R., McCuaig, O., & Linke, A.C. (2017). Methodological challenges in the comparison of infant fMRI across age groups. Developmental Cognitive Neuroscience. pdf
Linke, A.C., Olson, L., Gao, Y., Fishman, I., & Müller, R-A. (2017). Psychotropic medication use in autism spectrum disorders may affect functional brain connectivity. Biological Psychiatry. Cognitive Neuroscience and Neuroimaging. pdf
Herzmann, C., Zubiaurre-Elorza, L., Linke, A.C., Wild, C., Han, V.K., Lee, D.S.C., & Cusack, R. (2017). Using MRI to detect preserved function in a preterm infant with brain injury: A case report. The Journal of Pediatrics. pdf
Wild, C., Linke, A.C., Zubiaurre-Elorza, L., Herzmann, C., Duffy, H., Han, V.K., Lee, D.S.C., & Cusack, R. (2017). Adult-like cortical auditory processing of sung lullabies by 3- and 9-months old infants. NeuroImage. pdf
Lo, M., Zubiaurre-Elorza, L., Wild, C.J., Linke, A.C., Lee, D.S.C, Han, V.K., & Cusack, R. (2017). Brainstem shape is affected by clinical course in the Neonatal Intensive Care Unit. NeuroImage: Clinical. pdf
Linke, A.C., Jao Keehn, R.J., Pueschel, E., Fishman, I., & Müller, R.-A. (2017). Children with ASD show links between aberrant auditory processing, social symptoms, and atypical inter hemispheric and thalamocortical functional connectivity. Developmental Cognitive Neuroscience. pdf
Cusack, R., Linke, A.C., Zubiaurre-Elorza, L., Duffy, H., Herzmann, C., Stojanoski, B., Han, V., Lee, D.S.C., & Wild, C. (2017). Differences in the spatial and temporal patterns of head motion during MRI of adults and infants. bioRxiv. pdf
Clay, D.E., Linke, A.C., Cameron, D.J., Stojanoski, B., Rulisa, S., Wasunna, A., de Ribeaupierre, S., & Cusack, R. (2016). Evaluating affordable cranial ultrasonography in East African Neonatal Intensive Care Units. Ultrasound in Medicine & Biology. pdf
Cusack, R., Wild, C., Linke, A.C., Arichi, T., Lee, D.S.C., & Han, V.K. (2015). Optimizing stimulation and analysis protocols for neonatal fMRI. PLOS One. pdf
Linke, A.C., & Cusack, R. (2015). Flexible information coding in human auditory cortex during perception, imagery, and short-term memory of complex sounds. Journal of Cognitive Neuroscience. pdf
Cusack, R., Vicente-Grabovetsky, A., Mitchell, D.J., Wild, C., Auer, T., Linke, A.C., & Peelle, J.E. (2015). Automatic analysis: efficient neuroimaging workflows and parallel processing in Matlab and XML on your cluster or in the cloud. Frontiers in Neuroinformatics, 8 (90). pdf
Cusack, R., & Linke, A.C. (2015). Neuroimaging of the mind's ear using representational similarity analysis. Attention & Performance XXV. Mechanisms of Sensory Working Memory. Eds Pierre Jollicoeur & Christine Lefebvre. Chapter 18, 229-237.
Cusack, R., Stojanoski, B., Tran, M.C., Linke, A.C., & Wild, C.J. (2013). Pubmed Commons commentary on Mueller, J.L., Friederici, A.D., & Männel, C. (2012). Auditory perception at the root of language learning. Proceedings of the National Academy of Sciences, 109, 15953-15957. pubmed
Cusack, R., Veldsman, M., Naci, L., Mitchell, D. J., & Linke, A.C. (2012). Seeing Different Objects in Different Ways: Measuring Ventral Visual Tuning to Sensory and Semantic Features With Dynamically Adaptive Imaging. Human Brain Mapping, 33 (2), 387-397. pdf
Linke, A.C., Vicente-Grabovetsky, A., Cusack, R. (2011). Stimulus-specific suppression preserves information in auditory short-term memory. Proceedings of the National Academy of Sciences of the United States of America, 108 (31), 12961-12966. pubmed
Linke, A.C., Vicente-Grabovetsky, A., Mitchell, D.J., Cusack, R. (2011). Encoding strategy accounts for individual differences in change detection measures of VSTM. Neuropsychologia, 49 (6), 1476-1486. pubmed, pdf
Conference Presentations & Talks
Linke, A. (2025). Night at the MRI: How brain imaging can help us reveal why children with autism struggle to sleep. Discoveries and Dialogues, Invited Colloquium Talk, San Diego State University.
Arantes de Oliviera Campos, G., Cordova, M., Olson, L., Chen, B., Linke, A., Hau, J. & Fishman, I. (2025). Cerebellar white matter tracts in young children with autism spectrum disorder. Society for Neuroscience, San Diego, CA, United States.
Bloomer, B., Pedrahita, S., Cordova, M., Kohli, J.S., Tuy, S., Linke, A., Hau, J., Elden, M., Toro, G., Kinnear, M., Müller, R.-A., & Carper, R. (2025). Cerebellar lobular volumes in middle-age and older adults with autism spectrum disorder. Society for Neuroscience, San Diego, CA, United States.
Chen, B., Linke, A., Ji, L., Fishman, I. Brito, N., & Thomason, M. (2025). Development of Hurst Exponent from resting-state fMRI as a proxy of E/I balance in early childhood. International Society for Developmental Psychobiology, San Diego, CA, United States.
Linke, A. (2025). Beyond Infancy: Using fMRI to study links between neurodevelopment and behavior in toddlers and preschoolers with autism. Workshop: Studying Emerging Cognition in Infants using Neuroimaging and its Clinical Applications. Invited Talk. Killarney, Ireland.
Boxberger, A., Valois, J., Cordova, M., Tuy, S., Herrera, M., Do, T., Fishman, I. & Linke, A. (2025). Lower social communication skills in children with autism are associated with reduced synchrony of brain responses while watching an engaging movie. FLUX Congress, Dublin, Ireland.
Cordova, M., Hau, J., Pedrahita, S., Kohli, J., Wilkinson, M., Elden, M., Tuy, S., Linke, A., Fishman, I., Müller, R.-A, & Carper, R. (2025). Subcortico-Cortical White-Matter Tracts and Executive Function in Older Autistic Adults. FLUX Congress, Dublin, Ireland.
del Caño-Espinel, M., Linke, A., Hinzen, W., & Arribas, E. (2025). Harmonizing the Brain: The impact of music on children with neurological disorders. 20th Meeting of the Spanish Society for Neuroscience, Las Palmas de Gran Canaria, Spain.
Mahmalji, J, Rios, A., Herrera, M., Nguyen, T., Gandjbackhche, A., Olson, L, Chen, B., Linke, A., & Fishman, I. (2025). Early brain connectivity patterns and language skills in preschoolers with ASD and typically developing preschoolers. Society for Developmental and Behavioral Pediatrics, San Diego, CA, United States.
Linke, A., Pedrahita, S., Cordova, M., Wilkinson, M., Tuy, S., Toro, G., Alemu, K., Kohli, J., Hau, J., Müller, R.-A., & Carper, R. (2025). Altered glymphatic activity is associated with sleep problems and reduced cognitive function in middle-aged and older autistic adults. Sleep, Seattle, WA, United States.
Yakir, M., Mahmalji, J., Rios, A., Herrera, M., Cordova, M., Boxberger, A., Tuy, S., Fishman, I., Linke, A., & Bhattacharjee, R. (2025). Comparison of objective and subjective sleep data in children with autism spectrum disorder. Sleep, Seattle, WA, United States.
Yakir, M., Mahmalji, J., Rios, A., Herrera, M., Cordova, M., Boxberger, A., Tuy, S., Bhattacharjee, R., Fishman, I., & Linke, A. (2025). Relationship of auditory. hyper excitability and sleep efficiency in children with autism spectrum disorder. Sleep, Seattle, WA, United States.
del Caño-Espinel, M., Hinzen, W., & Linke, A. (2025). Changing the Brain Through Music. Invited Talk, VI Jornadas Neurocientíficas y Educativas, Madrid, Spain. https://www.youtube.com/watch?v=DrmD8YkVEz4
Montaña, G., Linke, A., Slušna, D., Muchart-López, J., Deco, G., & Hinzen, W. (2025). Brain function in language and associated networks in non- or minimally verbal children. European Congress of Psychiatry, Madrid, Spain.
Geer, J., Herrera, M., Boxberger, A., Mahmalji, J., Olson, L., Chen, B., Linke, A., & Fishman, I. (2025). Links between anxiety and parental stress - but not cognitive development - in young children with autism. Society for Developmental and Behavioral Pediatrics, San Diego, CA, United States.
Boxberger, A., Rios, A., Mahmalji, J., Herrera, M., Chen, B., Olson, L., Linke, A., Fishman, I. (2025). Towards understanding heterogeneity in ASD: Presence of oppositional defiant behaviors in young children with autism. International Society for Autism Research, Seattle, WA, United States.
Tuy, S., Hau, J., Rios, A., Herrera, M., Pedrahita, S., Carper, R., Fishman, I., Müller, R.-A., Linke, A. (2025). Diffusion weighted imaging of the anterior cingulate cortex in toddlers and preschoolers with autism spectrum disorder. International Society for Autism Research, Seattle, WA, United States.
Valois, J., Boxberger, A., Cordova, M., Herrera, M., Do, T., Fishman, I., Linke, A. (2025). Lower social communication skills in children with autism are associated with reduced synchrony of brain responses while watching an engaging movie. SDSU Student Symposium, San Diego, CA, United States.
Chen, B., Linke, A., J., Lanxin, Hendrix, C., Majbri, A., Duffy, M., Brito, N., Thomason, M. (2024). Reliability of the Hurst Exponent from infant functional MRI as a proxy of E/I balance. International Society for Developmental Psychobiology, Chicago, IL, United States.
Linke, A., Rios, A., Mahmalji, J., Salmina, M., Herrera, M., Boxberger, A., Cordova, M., Wilkinson, M., Müller, A., Fishman, I. (2024). Using fMRI to study auditory processing and language development in toddlers and preschoolers with autism. Society for Developmental Cognitive Neuroscience FLUX Congress, Baltimore, MD, United States. [Symposium Talk]
Mahmalji, J., Rios, A., Olson, L., Chen, B., Herrera, M., Linke, A., Fishman, I. (2024). Early brain connectivity patterns and language skills in typically developing preschoolers. Society for Developmental Cognitive Neuroscience FLUX Congress, Baltimore, MD, United States.
Cordova, M., Pedrahita, S., Linke, A., Toro, G., Wilkinson, M., Kohli, J., Hau, J., Fishman, I., Mueller, R.-A., & Carper, R. (2024). Subcortical volumes in middle-aged and older adults with and without autism spectrum disorder. Organization for Human Brain Mapping, Seoul, South Korea.
Pedrahita, S., Linke, A., Cordova, M., Wilkinson, M., Hau, J., Toro, G., Alemu, K., Kohli, J., Mueller, R.-A., & Carper, R. (2024). Decreased BOLD signal variability in middle-aged and older adults with autism. Organization for Human Brain Mapping, Seoul, South Korea.
Warner, M.R., Wu, F., Inkelis, S.M., Mung, K., Stauffer, J., Linke, A., & Bhattacharjee, R. (2024). Implementation of the San Diego Sleep Survey (SDSS) in Children with Autism. Sleep, Houston, TX, USA.
Boxberger, A., Rios, A., Mahmalji, J., Chen, B., Olson, L., Linke, A., & Fishman, I. (2024). Behavioral outcomes and functional connectivity of the fronto-parietal network in children with ASD and co-occurring attention problems. International Society for Autism Research, Melbourne, Australia. [Symposium Talk]
Linke, A., Chen, B., Rios, A., Mahmalji, J., Salmina, M., Bock, S., Herrera, M., Lee, E., Cordova, M., Wilkinson, M., Bhattacharjee, R., Müller, A., Fishman, I. (2024). Sleep problems in young children with autism are associated with atypical auditory cortical processing. International Society for Autism Research, Melbourne, Australia. [Symposium Talk]
Linke, A. (2023). Language impairment and atypical sound processing in ASD. Invited Talk, Universitat Pompeu Fabra, Barcelona, Spain.
Cordova, M., Porter, K.H., Toro, G., Linke, A., Schadler, A., Alemu, K., Pedrahita, S., Wilkinson, M., Kohli, J., Hau, J., Fishman, I., Mueller, R.-A., & Carper, R. (2023). Do subcortical volumes decline with age more precipitously in middle-aged and older adults with autism spectrum disorder. Flux, Santa Rosa, CA, United States.
Garcia, G., Linke, A., Kohli, J., Martindale, I., Shryock, I., Wilkinson, M., Cordova, M., Hau, J., Alemu, K., Toro, G., Pedrahita, S., Fishman, I., Mueller, R.-A., & Carper, R. (2023). Brain age index is greater in adults with autism than in age peers without autism. Society for Neuroscience, Washington, D.C., United States
Garcia, G., Linke, A., Kohli, J., Martindale, I., Shryock, I., Wilkinson, M., Cordova, M., Hau, J., Alemu, K., Toro, G., Pedrahita, S., Müller, R.A., & Carper, R. (2023). Differences in Brain Age in Adults with ASD as a Step Towards Understanding Atypical Brain Maturation Across the Lifespan. Flux, Santa Rosa, CA, United States.
Hau, J., Linke, A., Fishman, I., Müller, R.-A., & Carper, R. (2023). Controlling for orientation dispersion may improve DTI measures by reducing model error. Organization for Human Brain Mapping, Montréal, Canada.
Hau, J., Linke, A., Fishman, I., Müller, R.A., & Carper, R. (2023). Covarying for fiber orientation dispersion may increase sensitivity in DTI analyses. ISMRM Workshop on: White Matter, Analysis, Translation, Experimental Validation, Evaluation & Reproducibility, Nashville, TN, United States.
Toro, G., Linke, A., Alemu, K., Wilkinson, M., Cordova, M., Pedrahita, S., Hau, J., Mueller, R.-A., Fishman, I., & Carper, R. (2023). Functional MRI Shows Atypical Iron Accrual in the Striatum in Mature Adults with ASD. Society of Biological Psychiatry, San Diego, United States.
Mahmalji, J., Rios, A., Salmina, M., Chen, B., Olson, L., Linke, A., Fishman, I. (2023). Early brain connectivity patterns predict language skills in preschoolers with ASD. Developmental Cognitive Neuroscience FLUX Congress, Santa Rosa, CA, United States.
Chen, B., Bock, S., Olson, L., Rios, A., Mahmalji, J., Peña, S., Linke, A., & Fishman I. (2023). Examination of iron content in the striatum from functional MRI in young children with autism spectrum disorder. Society for Developmental Cognitive Neuroscience FLUX Congress, Santa Rosa, CA, United States.
Rios, A., Mahmalji, J., Ott, L., Salmina, M., Chen, B., Olson, L., Linke, A., & Fishman, I. (2023). Functional connectivity of fronto-parietal executive network is linked to co-occurring ADHD symptoms in preschoolers with autism spectrum disorder. Society of Biological Psychiatry, San Diego, CA, United States.
Mahmalji, J., Rios, A., Ott, L., Salmina, M., Linke, A., Fishman, I., (2023). Early brain connectivity patterns predict later language skills in preschoolers with ASD. SDSU Student Symposium (S3), San Diego, CA, United States.
Rios, A., Hau, J., Chen, B., Olson, L., Linke, A., Fishman, I. (2023). Maturational trajectories of the acoustic radiations, and links with sensory sensitivities and sleep problems in young children with autism. Society for Developmental Cognitive Neuroscience, Santa Rosa, CA, United States.
Chen, B., Rios, A., Olson, L., Salmina, M., Peña, S., Linke, A., Fishman, I. (2023). Effects of Early Exposure to More Than One Language in the Home on Language. International Neuropsychological Society. San Diego, CA, United States.
Chen, B., Linke, A., Olson, L., Kohli, J., Arcadio Arce, M., Peña, S.R., Andriasyan, A., Mendez-Pintado, E., Müller, R.-A., Carper, R., & Fishman, I. (2022). Multimodal investigation of brain morphology and local activity and connectivity in young children with ASD. International Society for Autism Research, Austin, Texas.
Meave, N., Alemu, K., Sridhar, A., Wilkinson, M., Manley, A., Linke, A. C., Jao Keehn, R. J., Fishman, I., & Müller, R.-A. (2022). Links of overconnectivity between sensory and salience network regions with elevated anxiety in ASD. Society for Neuroscience. San Diego, CA, United States.
Meave, N., Alemu, K., Sridhar, A., Wilkinson, M., Fishman, I., Linke, A. C., Jao Keehn, R. J., & Müller, R.-A. (2022). BOLD signal variability and its relationship with cognitive performance and anxiety symptoms in ASD. San Diego State University Student Research Symposium. San Diego, CA, United States.
Rios, A., Chen, B., Olson, L., Wilde, K., Salmina, M., Damon, Z., Peña, S., Linke, A., Fishman, I. (2022). Links between early sleep problems and neurobehavioral outcome in toddlers and preschoolers with ASD. Society for Neuroscience, San Diego, CA, United States.
Wilde, K. Chen, B., Olson, L., Rios, A., Salmina, M., Damon, Z., Peña, S., Linke, A., Fishman, I. (2022). Maternal bacterial infection or viral illness during pregnancy is associated with neurobehavioral outcomes in young children with autism spectrum disorder. Society for Neuroscience, San Diego, CA, United States.
Linke, A., Chen, B., Olson, L., Peña, S, Rios, A., Salmina, M., Damon, Z., Mueller, A., Fishman, I. (2022). Altered development of the Hurst Exponent in medial prefrontal cortex in young children with autism spectrum disorders. Society for Developmental Cognitive Neuroscience: Fetal, Infant, and Neuroimaging Group, Paris, France.
Chen, B., Linke, A., Olson, L., Peña, S., Salmina, M., Rios, A., Damon, Z., Vu, J., Fishman, I. (2022). Atypical functional organization of auditory cortex is linked with autism symptoms in young children with ASD. Cognitive Neuroscience Society, San Francisco, CA, United States.
Rios, A., Wilde, K., Chen, B., Olson, L., Pena, S., Linke, A., Fishman, I. (2022). Links between poor sleep in the first year of life and later neurocognitive outcomes in young children with autism. SDSU Student Research Symposium, San Diego, CA, United States.
Alemu, K., Sridhar, A., Wilkinson, M., Marinkovic, R., Jao Keehn, R.J., Linke, A., & Müller, R.-A. “Reduced inter-subject correlations of brain activity patterns during lexicosemantic decision in adolescents with ASD”. FLUX Virtual Congress, 2021.
Kohli, J., Martindale, I., Wilkinson, M., Kinnear, M., Linke, A., Hau, J., Müller, R.-A., & Carper, A. “Altered links between anterior cingulate cortex anatomy and inhibition skills in middle to older aged adults with autism spectrum disorder (ASD)”. Society of Biological Psychiatry Annual (virtual) Meeting, 2021.
Chen, B., Linke, A.C., Fishman, I. “Executive functioning in a community sample of children and adolescents with autism spectrum disorder and/or attention-deficit/hyperactivity disorder.” International Neuropsychological Society, Covid-19 Virtual Meeting, 2021.
Sridhar, A., Jao Keehn, R.J., Wilkson, M., Olson, M., Alemu, K., Marinkovic, K., Linke, A., & Müller, R.-A. “Changes in neural network connectivity across brain states in ASD.” International Neuropsychological Society, Covid-19 Virtual Meeting, 2021.
Tung, R., Reiter, M.A., Linke, A.C., Kohli, J.S., Kinnear, M.K., Fishman, I., Carper, R.A., & Müller, R.-A. “Functional connectivity within the anxiety network is atypical in middle-aged adults with autism and is associated with anxiety symptom severity”. International Society for Autism Research, Covid-19 Virtual Meeting, 2020.
Martindale, I.A., Chen, B., Kohli, J.S., Linke, A., Olson, L., Müller, R.-A., Carper, R.A., & Fishman, I. “Associations between local gyrification, age and symptom severity in toddlers and preschoolers with autism spectrum disorders”. International Society for Autism Research, Covid-19 Virtual Meeting, 2020.
Linke, A.C., Kinnear, M.K., Kohli, J.S., Fong, C.H., Tung, R.A., Carper, R.A., & Müller, R.-A. “Dynamic time warping outperforms Pearson correlation in detecting atypical functional connectivity in autism”. Organization for Human Brain Mapping, Annual Meeting, Rome, Italy, 2019.
Chen, B., Linke, A.C., Olson, L., Fong, C.H., Reynolds, S., Kinnear, M., Müller, R.-A., & Fishman, I. “Atypical brain network connectivity proximal to behavioral symptom onset in toddlers with autism spectrum disorders”. International Society for Autism Research, Annual Meeting, Montreal, Canada, 2019.
Chen, B., Linke, A.C., Fong, C., Olson, L., Reynolds, S., Kinnear, M., Müller, R.-A., & Fishman, I. "Atypical visual network connectivity in toddlers with autism spectrum disorders". Society for Neuroscience, Annual Meeting, San Diego, California, 2018.
Olson, L., Linke, A.C., Mash, L.E., Reiter, M., Müller, R.-A., & Fishman, I. "Gender-related differences in intrinsic functional connectivity in children and adolescents with autism spectrum disorders". Society for Neuroscience, Annual Meeting, San Diego, California, 2018.
Gao, Y., Kohli, J.S., Fong, C., Linke, A.C., Fishman, I., Carper, R.A., & Müller, R.-A. "Anatomical correlates of language connectivity-based subgrouping in autism spectrum disorder". Society for Neuroscience, Annual Meeting, San Diego, California, 2018.
Ibarra, C., Chen, B., Reynolds, S., Olson, L, Fong, C., Linke, A.C., Kinnear, M., & Fishman, I. "Atypical salience network connectivity underlying early emotion dysregulation in toddlers with ASD". Society for Neuroscience, Annual Meeting, San Diego, California, 2018.
Reynolds, S., Linke, A.C., Chen, B., Fong, C., Olson, L., Kinnear, M., & Fishman, I. "Atypical brain connectivity of pSTS in toddlers with autism spectrum disorders". Society for Neuroscience, Annual Meeting, San Diego, California, 2018.
Linke, A.C., Kinnear, M.K., Snell, W., Kohli, J.S., Fong, C., Mash, L., Marshall, S., Jao Keehn, R.J., Fishman, I., Carper, R.A., & Müller, R.-A. "Global signal amplitude in eyes-open resting state fMRI is increased in adults and related to executive function". Sixth Biennial Conference on Resting-State and Brain Connectivity, Montreal, Canada, 2018.
Cabral, L., Zubiaurre-Elorza, L., Wild, C., Linke, A.C., & Cusack, R. Visual categories in infancy: local sensitivity and structural connectivity mature together. Sixth Biennial Conference on Resting-State and Brain Connectivity, Montreal, Canada, 2018.
Mash, L.E., Linke, A.C., Fong, C.H., Falahpour, M., Liu, T.T., & Mueller, R.-A. "Dynamic fcMRI reveals transient atypical connectivity patterns in adolescents with Autism Spectrum Disorders". International Society for Autism Research, Annual Meeting, Rotterdam, Netherlands, 2018.
Olsen, L., Linke, A.C., Mash, L.E., Reiter, M.A., Mueller, R.-A., & Fishman, I. "Broadly reduced intrinsic functional connectivity in girls compared to boys with Autism Spectrum Disorders". International Society for Autism Research, Annual Meeting, Rotterdam, Netherlands, 2018.
Reiter, M.A., Mash, L.E., Liu, J., Fong, C.H., Linke, A.C., Fishman, I., & Mueller, R.-A. "Altered resting-state functional connectivity in individuals with ASDs and impaired cognitive functioning". International Society for Autism Research, Annual Meeting, Rotterdam, Netherlands, 2018.
Cabral, L.M., Zubiaurre, L., Wild, C.J., Linke, A.C., & Cusack, R. "Don't represent what you cannot handle: Connectivity of category-specific regions in infants". Society for Neuroscience, Annual Meeting, Washington D.C., 2017.
Gao, Y, Linke, A.C., Jahedi, A., Punyamurthula, S., Fong, C., Fishman, I., & Müller, R.-A. "Language network connectivity indicates subgroups in children with autism spectrum disorders". Organization for Human Brain Mapping Annual Meeting, Vancouver, Canada, 2017.
Linke, A.C. "Recent experiences using SMS imaging in BOLD fMRI studies". Morning Symposium "High resolution fMRI via multiband (SMS) acquisition: opportunities and limitations". Organization for Human Brain Mapping Annual Meeting, Vancouver, Canada, 2017.
Kinnear, M., Linke, A.C., Solders, S., Carper, R., & Müller, R.-A. "Impaired motor function and atypical motor cortex connectivity in mature adults with autism spectrum disorder". Society of Biological Psychiatry Annual Meeting, San Diego, California, 2017.
Reynolds, S., Linke, A.C., Müller, R.-A., & Fishman, I. "Effects of heart rate regressors on functional connectivity in ASDs". Society of Biological Psychiatry Annual Meeting, San Diego, California, 2017.
Reiter, M., Gao Y., Linke, A.C., Keehn, R.J.J., Fishman, I., & Müller, R.-A. "Underconnectivity between anterior and posterior default mode nodes in individuals with ASD and low cognitive ability". Society of Biological Psychiatry Annual Meeting, San Diego, California, 2017.
Linke, A.C., Jao Keehn, R.J., Pueschel, E., & Müller, R.-A. "Auditory thalamocortical over connectivity in autism is related to altered topographic organization of auditory cortex". Nanosymposium Talk. Society for Neuroscience, Annual Meeting, San Diego, California, 2016.
Harikumar, A., Linke, A.C., Berkebile, M., Fong, C., Zhao, W., Fishman, I., & Müller, R.-A. "Amplitude of resting state low frequency BOLD fluctuations in autism". Nanosymposium Talk. Society for Neuroscience, Annual Meeting, San Diego, California, 2016.
Jahedi, A., Meeni, V., Linke, A.C., Nair, S., Chen, P., Bailey, B.B., & Müller, R.-A. "Resting state fMRI connectome differentiates autism from typical development". Society for Neuroscience, Annual Meeting, San Diego, California, 2016.
Macari, A.C., Berkebile, M., Linke, A.C., Zhao, W., & Müller, R.-A. "Domain specificity of altered cortico-striatal functional connectivity in children and adolescents with autism". Nanosymposium Talk. Society for Neuroscience, Annual Meeting, San Diego, California, 2016.
Roach-Fox, E., Linke, A.C., Cusack R., Vriezen, E., & Prasad, A. "Unravelling the da Vinci code through neuroimaging: Sudden-onset mirror writing in a healthy child". Human Brain Mapping Annual Meeting, Geneva, Switzerland, 2016.
Ropat, J., Linke, A.C., Wild, C., Herzmann, C., Duffy, H., Lee, D., & Han, V., & Cusack, R. "Connectivity in the motor network matures before the emergence of complex motor behavior". Canadian National Perinatal Research Meeting, Banff, Canada, 2016.
Linke, A.C., Wild, C., Zubiaurre-Elorza, L., Herzmann, C., Duffy, H., Lee, D.S.C., Han, V., & Cusack, R. "Using functional MRI to assess the impact of prematurity and perinatal brain injury on brain function." Pediatric Academic Societies, Annual Meeting, San Diego, California, 2015.
Zubiaurre-Elorza, L., Linke, A.C., Wild, C., Herzmann, C., Duffy, H., Lee, D.S.C., Han, V., & Cusack, R. "Developmental differences in auditory structural connectivity." Pediatric Academic Societies, Annual Meeting, San Diego, California, 2015.
Wild, C., Linke, A.C., Zubiaurre-Elorza, L., Herzmann, C., Duffy, H., Han, V., Lee, D.S.C., & Cusack, R. "Measuring the development of auditory-language function in the first postnatal year with neuroimaging". Pediatric Academic Societies, Annual Meeting, San Diego, California, 2015.
Linke, A.C., Wild, C., Zubiaurre-Elorza, L., Herzmann, C., Duffy, H., Lee, D., Han, V., & Cusack, R. "Optimizing fMRI for assessing auditory brain function in neonates". Invited Talk. Pediatric Research Day, London, Canada, 2014.
Zubiaurre-Elorza, L., Linke, A., Herzmann, C., Wild, C., Duffy, H., & Cusack, R. "Development of thalamo-cortical connectivity during the first postnatal year". International Society for Developmental Neuroscience, Montreal, Canada, 2014.
Wild, C., Linke, A.C., Zubiaurre-Elorza, L., Herzmann, C., Duffy, H., Lee, D., Han, V., & Cusack, R. "Optimizing auditory fMRI for infants and neonates". International Society for Developmental Neuroscience, Montreal, Canada, 2014.
Linke, A.C., Wild., C., Zubiaurre-Elorza, L., Lee, D., Han.V., & Cusack, R. "Assessing perinatal brain injury using functional MRI". Canadian National Perinatal Research Meeting, Banff, Canada, 2014.
Cusack, R., Stojanoski, B., Linke, A.C., Cameron, D., & Clay, D. "Using affordable neuroimaging technology to measure the newborn brain in East Africa". Western Global Health Research Workshop, 2014.
Auer, T., Vicente-Grabovetsky, A., Mitchell, D.J, Wild, C., Linke, A.C., Peele, J.E., Cusack, R. "Automatic analysis (aa) pipelines: new features for large multimodal datasets." Human Brain Mapping, 2014.
Linke, A.C., & Cusack, R. "Using neuroimaging and multi-voxel pattern analysis to study flexible coding in human auditory cortex". Invited Talk. New Ideas in Hearing Workshop: Sensory Processing: How the Past affects the Present, Paris, France, 2013.
Linke, A.C., Matthews, M., Gati, J., & Cusack, R. "Using ultra high-field fMRI and multivariate methods to study neural representations of complex sounds in human auditory cortex". Invited Talk. Association for Research in Otolaryngology MidWinter Meeting, Young Investigator Symposium, Baltimore, 2013.
Cusack, R., Wild. C., Arichi T., Gelman, N., & Linke, A. "Designing stimulation protocols to maximize sensitivity in neonatal fMRI". European Society of Paediatric Radiology, Porto, Portugal, 2013.
Linke, A.C., & Cusack, R. “Decoding feature information in human auditory cortex - a comparison of auditory perception, short-term memory and imagery”. The Journal of the Acoustical Society of America, 131, 3386. Invited Talk, Acoustics, Hong Kong, China, 2012.
Linke, A.C., & Cusack, R. “Task-dependent feature representations of complex sounds in human auditory cortex.” Computational and Systems Neuroscience (Cosyne), Salt Lake City, 2012.
Linke, A.C., & Cusack, R. “Remembering by imagining? Auditory short-term memory and imagery do not share the same neural mechanisms.” Human Brain Mapping, Quebec City, 2011.
Naci, L., Linke, A., Vicente-Grabovetsky, A., Gaudrin, E., Monti, M., Owen, A., & Cusack, R. “Using multi-voxel pattern analysis to decode the targets of auditory selective attention and imagery.” International Conference on Cognitive Neuroscience, Mallorca, Spain, 2011.
Linke, A.C., Vicente-Grabovetsky, A., Mitchell, D.J., & Cusack, R. “Individual Differences in Change Detection Measures of Short-Term Memory Capacity can be explained by Encoding Strategy.” Cognitive Neuroscience Society Annual Meeting, San Francisco, 2011.
Linke, A., & Cusack, R. “Complex sounds decoded – processing semantic and perceptual features in the auditory system.” Human Brain Mapping, Barcelona, 2010.
Cusack, R., Veldsman, M., Naci, L., Mitchell, D.J., & Linke, A. “Ventral visual tuning to sensory and semantic features differs by object.” Experimental Psychology Society, Manchester, 2010.
Cusack, R., Veldsman, M., Naci, L., Mitchell, D.J., & Linke, A. “Rapidly characterising multidimensional neural tuning to sensory and semantic features of real-world objects using Dynamically Adaptive Imaging.” Cognitive Neuroscience Society, Montreal, 2010
Linke, A., & Cusack, R. “Assessing Tonotopy in Human Audition during a Change Detection Task – A Multi-Voxel Pattern Analysis Approach.” Association for Research in Otolaryngology MidWinter Meeting, Los Angeles, 2010.